Tissue-Specific Transcriptome Analysis Reveals Multiple Responses to Salt Stress in Populus euphratica Seedlings.
Identifieur interne : 001147 ( Main/Exploration ); précédent : 001146; suivant : 001148Tissue-Specific Transcriptome Analysis Reveals Multiple Responses to Salt Stress in Populus euphratica Seedlings.
Auteurs : Le Yu [République populaire de Chine] ; Jianchao Ma [République populaire de Chine] ; Zhimin Niu [République populaire de Chine] ; Xiaotao Bai [République populaire de Chine] ; Wenli Lei [République populaire de Chine] ; Xuemin Shao [République populaire de Chine] ; Ningning Chen [République populaire de Chine] ; Fangfang Zhou [République populaire de Chine] ; Dongshi Wan [République populaire de Chine]Source :
- Genes [ 2073-4425 ] ; 2017.
Abstract
Salt stress is one of the most crucial factors impacting plant growth, development and reproduction. However, information regarding differences in tissue-specific gene expression patterns, which may improve a plant's tolerance to salt stress, is limited. Here, we investigated the gene expression patterns in tissues of Populus euphratica Oliv. seedlings using RNA sequencing (RNA-Seq) technology. A total of 109.3 million, 125bp paired-end clean reads were generated, and 6428, 4797, 2335 and 3358 differentially expressed genes (DEGs) were identified in leaf, phloem, xylem and root tissues, respectively. While the tissue-specific DEGs under salt stress had diverse functions, "membrane transporter activity" was the most significant leaf function, whereas "oxidation-reduction process" was the most significant function in root tissue. Further analysis of the tissue-specific DEGs showed that the expression patterns or functions of gene families, such as SOS, NHX, GolS, GPX, APX, RBOHF and CBL, were diverse, suggesting that calcium signaling, reactive oxygen species (ROS) and salt overly sensitive (SOS) pathways are all involved in ionic homeostasis in tissues from P. euphratica seedlings. The DEGs, for example the up-regulated antioxidant genes, contribute to ROS-scavenging induced by salt stress but result in decreased Na⁺ concentrations in root vasculature cells and in xylem sap, while the down-regulated rbohF leads to the reverse results. These results suggest that the divergence of DEGs expression patterns contribute to maintenance of ionic and ROS homeostasis in tissues and improve plant salinity tolerance. We comprehensively analyzed the response of P. euphratica seedlings to salt stress and provide helpful genetic resources for studying plant-abiotic stress interactions.
DOI: 10.3390/genes8120372
PubMed: 29292723
PubMed Central: PMC5748690
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Tissue-Specific Transcriptome Analysis Reveals Multiple Responses to Salt Stress in Populus euphratica Seedlings.</title><author><name sortKey="Yu, Le" sort="Yu, Le" uniqKey="Yu L" first="Le" last="Yu">Le Yu</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000, China. yul15@lzu.edu.cn.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000</wicri:regionArea><wicri:noRegion>Lanzhou 730000</wicri:noRegion></affiliation></author><author><name sortKey="Ma, Jianchao" sort="Ma, Jianchao" uniqKey="Ma J" first="Jianchao" last="Ma">Jianchao Ma</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000, China. majch15@lzu.edu.cn.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000</wicri:regionArea><wicri:noRegion>Lanzhou 730000</wicri:noRegion></affiliation></author><author><name sortKey="Niu, Zhimin" sort="Niu, Zhimin" uniqKey="Niu Z" first="Zhimin" last="Niu">Zhimin Niu</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000, China. niuzhm16@lzu.edu.cn.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000</wicri:regionArea><wicri:noRegion>Lanzhou 730000</wicri:noRegion></affiliation></author><author><name sortKey="Bai, Xiaotao" sort="Bai, Xiaotao" uniqKey="Bai X" first="Xiaotao" last="Bai">Xiaotao Bai</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000, China. bxt15138691581@163.com.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000</wicri:regionArea><wicri:noRegion>Lanzhou 730000</wicri:noRegion></affiliation></author><author><name sortKey="Lei, Wenli" sort="Lei, Wenli" uniqKey="Lei W" first="Wenli" last="Lei">Wenli Lei</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000, China. leiwl15@lzu.edu.cn.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000</wicri:regionArea><wicri:noRegion>Lanzhou 730000</wicri:noRegion></affiliation></author><author><name sortKey="Shao, Xuemin" sort="Shao, Xuemin" uniqKey="Shao X" first="Xuemin" last="Shao">Xuemin Shao</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000, China. shaoxm15@lzu.edu.cn.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000</wicri:regionArea><wicri:noRegion>Lanzhou 730000</wicri:noRegion></affiliation></author><author><name sortKey="Chen, Ningning" sort="Chen, Ningning" uniqKey="Chen N" first="Ningning" last="Chen">Ningning Chen</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000, China. chennn2015@lzu.edu.cn.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000</wicri:regionArea><wicri:noRegion>Lanzhou 730000</wicri:noRegion></affiliation></author><author><name sortKey="Zhou, Fangfang" sort="Zhou, Fangfang" uniqKey="Zhou F" first="Fangfang" last="Zhou">Fangfang Zhou</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000, China. zhouff16@lzu.edu.cn.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000</wicri:regionArea><wicri:noRegion>Lanzhou 730000</wicri:noRegion></affiliation></author><author><name sortKey="Wan, Dongshi" sort="Wan, Dongshi" uniqKey="Wan D" first="Dongshi" last="Wan">Dongshi Wan</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000, China. wandsh@lzu.edu.cn.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000</wicri:regionArea><wicri:noRegion>Lanzhou 730000</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2017">2017</date><idno type="RBID">pubmed:29292723</idno><idno type="pmid">29292723</idno><idno type="doi">10.3390/genes8120372</idno><idno type="pmc">PMC5748690</idno><idno type="wicri:Area/Main/Corpus">001020</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">001020</idno><idno type="wicri:Area/Main/Curation">001020</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">001020</idno><idno type="wicri:Area/Main/Exploration">001020</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Tissue-Specific Transcriptome Analysis Reveals Multiple Responses to Salt Stress in Populus euphratica Seedlings.</title><author><name sortKey="Yu, Le" sort="Yu, Le" uniqKey="Yu L" first="Le" last="Yu">Le Yu</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000, China. yul15@lzu.edu.cn.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000</wicri:regionArea><wicri:noRegion>Lanzhou 730000</wicri:noRegion></affiliation></author><author><name sortKey="Ma, Jianchao" sort="Ma, Jianchao" uniqKey="Ma J" first="Jianchao" last="Ma">Jianchao Ma</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000, China. majch15@lzu.edu.cn.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000</wicri:regionArea><wicri:noRegion>Lanzhou 730000</wicri:noRegion></affiliation></author><author><name sortKey="Niu, Zhimin" sort="Niu, Zhimin" uniqKey="Niu Z" first="Zhimin" last="Niu">Zhimin Niu</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000, China. niuzhm16@lzu.edu.cn.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000</wicri:regionArea><wicri:noRegion>Lanzhou 730000</wicri:noRegion></affiliation></author><author><name sortKey="Bai, Xiaotao" sort="Bai, Xiaotao" uniqKey="Bai X" first="Xiaotao" last="Bai">Xiaotao Bai</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000, China. bxt15138691581@163.com.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000</wicri:regionArea><wicri:noRegion>Lanzhou 730000</wicri:noRegion></affiliation></author><author><name sortKey="Lei, Wenli" sort="Lei, Wenli" uniqKey="Lei W" first="Wenli" last="Lei">Wenli Lei</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000, China. leiwl15@lzu.edu.cn.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000</wicri:regionArea><wicri:noRegion>Lanzhou 730000</wicri:noRegion></affiliation></author><author><name sortKey="Shao, Xuemin" sort="Shao, Xuemin" uniqKey="Shao X" first="Xuemin" last="Shao">Xuemin Shao</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000, China. shaoxm15@lzu.edu.cn.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000</wicri:regionArea><wicri:noRegion>Lanzhou 730000</wicri:noRegion></affiliation></author><author><name sortKey="Chen, Ningning" sort="Chen, Ningning" uniqKey="Chen N" first="Ningning" last="Chen">Ningning Chen</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000, China. chennn2015@lzu.edu.cn.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000</wicri:regionArea><wicri:noRegion>Lanzhou 730000</wicri:noRegion></affiliation></author><author><name sortKey="Zhou, Fangfang" sort="Zhou, Fangfang" uniqKey="Zhou F" first="Fangfang" last="Zhou">Fangfang Zhou</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000, China. zhouff16@lzu.edu.cn.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000</wicri:regionArea><wicri:noRegion>Lanzhou 730000</wicri:noRegion></affiliation></author><author><name sortKey="Wan, Dongshi" sort="Wan, Dongshi" uniqKey="Wan D" first="Dongshi" last="Wan">Dongshi Wan</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000, China. wandsh@lzu.edu.cn.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000</wicri:regionArea><wicri:noRegion>Lanzhou 730000</wicri:noRegion></affiliation></author></analytic><series><title level="j">Genes</title><idno type="ISSN">2073-4425</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Salt stress is one of the most crucial factors impacting plant growth, development and reproduction. However, information regarding differences in tissue-specific gene expression patterns, which may improve a plant's tolerance to salt stress, is limited. Here, we investigated the gene expression patterns in tissues of <i>Populus euphratica</i> Oliv. seedlings using RNA sequencing (RNA-Seq) technology. A total of 109.3 million, 125bp paired-end clean reads were generated, and 6428, 4797, 2335 and 3358 differentially expressed genes (DEGs) were identified in leaf, phloem, xylem and root tissues, respectively. While the tissue-specific DEGs under salt stress had diverse functions, "membrane transporter activity" was the most significant leaf function, whereas "oxidation-reduction process" was the most significant function in root tissue. Further analysis of the tissue-specific DEGs showed that the expression patterns or functions of gene families, such as <i>SOS</i>, <i>NHX</i>, <i>GolS</i>, <i>GPX</i>, <i>APX</i>, <i>RBOHF</i> and <i>CBL</i>, were diverse, suggesting that calcium signaling, reactive oxygen species (ROS) and salt overly sensitive (SOS) pathways are all involved in ionic homeostasis in tissues from <i>P. euphratica</i> seedlings. The DEGs, for example the up-regulated antioxidant genes, contribute to ROS-scavenging induced by salt stress but result in decreased Na⁺ concentrations in root vasculature cells and in xylem sap, while the down-regulated <i>rbohF</i> leads to the reverse results. These results suggest that the divergence of DEGs expression patterns contribute to maintenance of ionic and ROS homeostasis in tissues and improve plant salinity tolerance. We comprehensively analyzed the response of <i>P. euphratica</i> seedlings to salt stress and provide helpful genetic resources for studying plant-abiotic stress interactions.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">29292723</PMID><DateRevised><Year>2019</Year><Month>11</Month><Day>20</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Print">2073-4425</ISSN><JournalIssue CitedMedium="Print"><Volume>8</Volume><Issue>12</Issue><PubDate><Year>2017</Year><Month>Dec</Month><Day>08</Day></PubDate></JournalIssue><Title>Genes</Title><ISOAbbreviation>Genes (Basel)</ISOAbbreviation></Journal><ArticleTitle>Tissue-Specific Transcriptome Analysis Reveals Multiple Responses to Salt Stress in Populus euphratica Seedlings.</ArticleTitle><ELocationID EIdType="pii" ValidYN="Y">E372</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.3390/genes8120372</ELocationID><Abstract><AbstractText>Salt stress is one of the most crucial factors impacting plant growth, development and reproduction. However, information regarding differences in tissue-specific gene expression patterns, which may improve a plant's tolerance to salt stress, is limited. Here, we investigated the gene expression patterns in tissues of <i>Populus euphratica</i> Oliv. seedlings using RNA sequencing (RNA-Seq) technology. A total of 109.3 million, 125bp paired-end clean reads were generated, and 6428, 4797, 2335 and 3358 differentially expressed genes (DEGs) were identified in leaf, phloem, xylem and root tissues, respectively. While the tissue-specific DEGs under salt stress had diverse functions, "membrane transporter activity" was the most significant leaf function, whereas "oxidation-reduction process" was the most significant function in root tissue. Further analysis of the tissue-specific DEGs showed that the expression patterns or functions of gene families, such as <i>SOS</i>, <i>NHX</i>, <i>GolS</i>, <i>GPX</i>, <i>APX</i>, <i>RBOHF</i> and <i>CBL</i>, were diverse, suggesting that calcium signaling, reactive oxygen species (ROS) and salt overly sensitive (SOS) pathways are all involved in ionic homeostasis in tissues from <i>P. euphratica</i> seedlings. The DEGs, for example the up-regulated antioxidant genes, contribute to ROS-scavenging induced by salt stress but result in decreased Na⁺ concentrations in root vasculature cells and in xylem sap, while the down-regulated <i>rbohF</i> leads to the reverse results. These results suggest that the divergence of DEGs expression patterns contribute to maintenance of ionic and ROS homeostasis in tissues and improve plant salinity tolerance. We comprehensively analyzed the response of <i>P. euphratica</i> seedlings to salt stress and provide helpful genetic resources for studying plant-abiotic stress interactions.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Yu</LastName><ForeName>Le</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000, China. yul15@lzu.edu.cn.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ma</LastName><ForeName>Jianchao</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000, China. majch15@lzu.edu.cn.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Niu</LastName><ForeName>Zhimin</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000, China. niuzhm16@lzu.edu.cn.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bai</LastName><ForeName>Xiaotao</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000, China. bxt15138691581@163.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lei</LastName><ForeName>Wenli</ForeName><Initials>W</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000, China. leiwl15@lzu.edu.cn.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Shao</LastName><ForeName>Xuemin</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000, China. shaoxm15@lzu.edu.cn.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>Ningning</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000, China. chennn2015@lzu.edu.cn.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhou</LastName><ForeName>Fangfang</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000, China. zhouff16@lzu.edu.cn.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wan</LastName><ForeName>Dongshi</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, Lanzhou 730000, China. wandsh@lzu.edu.cn.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>12</Month><Day>08</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Genes (Basel)</MedlineTA><NlmUniqueID>101551097</NlmUniqueID><ISSNLinking>2073-4425</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Populus euphratica</Keyword><Keyword MajorTopicYN="N">differentially expressed gene</Keyword><Keyword MajorTopicYN="N">salinity stress</Keyword><Keyword MajorTopicYN="N">tissue-specific</Keyword><Keyword MajorTopicYN="N">transcriptome</Keyword></KeywordList><CoiStatement>The authors declare no conflict of interest.</CoiStatement></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2017</Year><Month>09</Month><Day>07</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2017</Year><Month>11</Month><Day>24</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2017</Year><Month>11</Month><Day>29</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2018</Year><Month>1</Month><Day>3</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2018</Year><Month>1</Month><Day>3</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2018</Year><Month>1</Month><Day>3</Day><Hour>6</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">29292723</ArticleId><ArticleId IdType="pii">genes8120372</ArticleId><ArticleId IdType="doi">10.3390/genes8120372</ArticleId><ArticleId IdType="pmc">PMC5748690</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Annu Rev Plant Biol. 2008;59:651-81</Citation><ArticleIdList><ArticleId IdType="pubmed">18444910</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2001 Apr;17(4):309-18</Citation><ArticleIdList><ArticleId IdType="pubmed">11301299</ArticleId></ArticleIdList></Reference><Reference><Citation>J Exp Bot. 2006;57(5):1181-99</Citation><ArticleIdList><ArticleId IdType="pubmed">16513813</ArticleId></ArticleIdList></Reference><Reference><Citation>Physiol Plant. 2009 Oct;137(2):166-74</Citation><ArticleIdList><ArticleId IdType="pubmed">19678897</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Plant Biol. 2016 Jan 28;16:34</Citation><ArticleIdList><ArticleId IdType="pubmed">26822690</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell Environ. 2015 Sep;38(9):1794-816</Citation><ArticleIdList><ArticleId IdType="pubmed">25159181</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2002 Jun 25;99(13):9061-6</Citation><ArticleIdList><ArticleId IdType="pubmed">12070350</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2010 Nov 15;5(11):e13984</Citation><ArticleIdList><ArticleId IdType="pubmed">21085593</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell Environ. 2010 Jun;33(6):943-58</Citation><ArticleIdList><ArticleId IdType="pubmed">20082667</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell Environ. 2002 Feb;25(2):173-194</Citation><ArticleIdList><ArticleId IdType="pubmed">11841662</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 1982 Oct 29;218(4571):443-8</Citation><ArticleIdList><ArticleId IdType="pubmed">17808529</ArticleId></ArticleIdList></Reference><Reference><Citation>Methods. 2001 Dec;25(4):402-8</Citation><ArticleIdList><ArticleId IdType="pubmed">11846609</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2009 May 1;25(9):1105-11</Citation><ArticleIdList><ArticleId IdType="pubmed">19289445</ArticleId></ArticleIdList></Reference><Reference><Citation>J Exp Bot. 2016 Feb;67(3):835-44</Citation><ArticleIdList><ArticleId IdType="pubmed">26585227</ArticleId></ArticleIdList></Reference><Reference><Citation>Trends Plant Sci. 2002 Sep;7(9):405-10</Citation><ArticleIdList><ArticleId IdType="pubmed">12234732</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant J. 2002 Jun;30(5):529-39</Citation><ArticleIdList><ArticleId IdType="pubmed">12047628</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Biotechnol. 2010 May;28(5):511-5</Citation><ArticleIdList><ArticleId IdType="pubmed">20436464</ArticleId></ArticleIdList></Reference><Reference><Citation>Genes (Basel). 2016 Dec 01;7(12 ):</Citation><ArticleIdList><ArticleId IdType="pubmed">27916935</ArticleId></ArticleIdList></Reference><Reference><Citation>Annu Rev Plant Biol. 2002;53:247-73</Citation><ArticleIdList><ArticleId IdType="pubmed">12221975</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2007 Dec 18;104(51):20623-8</Citation><ArticleIdList><ArticleId IdType="pubmed">18077346</ArticleId></ArticleIdList></Reference><Reference><Citation>Tree Physiol. 2011 Apr;31(4):452-61</Citation><ArticleIdList><ArticleId IdType="pubmed">21427158</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Mol Biol. 2005 May;58(1):75-88</Citation><ArticleIdList><ArticleId IdType="pubmed">16028118</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 1998 Jun 19;280(5371):1943-5</Citation><ArticleIdList><ArticleId IdType="pubmed">9632394</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Mol Biol. 2014 Aug;85(6):589-99</Citation><ArticleIdList><ArticleId IdType="pubmed">24879533</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2012;7(2):e32124</Citation><ArticleIdList><ArticleId IdType="pubmed">22355415</ArticleId></ArticleIdList></Reference><Reference><Citation>FEBS Lett. 2007 May 25;581(12):2247-54</Citation><ArticleIdList><ArticleId IdType="pubmed">17459382</ArticleId></ArticleIdList></Reference><Reference><Citation>Brief Funct Genomic Proteomic. 2006 Feb;4(4):343-54</Citation><ArticleIdList><ArticleId IdType="pubmed">17202125</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2002 Jun 11;99(12):8436-41</Citation><ArticleIdList><ArticleId IdType="pubmed">12034882</ArticleId></ArticleIdList></Reference><Reference><Citation>FEBS Lett. 2002 Nov 6;531(2):157-61</Citation><ArticleIdList><ArticleId IdType="pubmed">12417304</ArticleId></ArticleIdList></Reference><Reference><Citation>Trends Plant Sci. 2014 Jun;19(6):371-9</Citation><ArticleIdList><ArticleId IdType="pubmed">24630845</ArticleId></ArticleIdList></Reference><Reference><Citation>Evol Bioinform Online. 2015 Aug 05;11(Suppl 1):47-55</Citation><ArticleIdList><ArticleId IdType="pubmed">26309388</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Genomics. 2014 May 04;15:337</Citation><ArticleIdList><ArticleId IdType="pubmed">24886148</ArticleId></ArticleIdList></Reference><Reference><Citation>Trends Plant Sci. 2005 Feb;10(2):88-94</Citation><ArticleIdList><ArticleId IdType="pubmed">15708346</ArticleId></ArticleIdList></Reference><Reference><Citation>Gene. 2013 Jun 1;521(2):265-73</Citation><ArticleIdList><ArticleId IdType="pubmed">23545306</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2006 Sep 15;313(5793):1596-604</Citation><ArticleIdList><ArticleId IdType="pubmed">16973872</ArticleId></ArticleIdList></Reference><Reference><Citation>Curr Opin Plant Biol. 2010 Apr;13(2):132-8</Citation><ArticleIdList><ArticleId IdType="pubmed">20080055</ArticleId></ArticleIdList></Reference><Reference><Citation>J Plant Physiol. 2004 May;161(5):531-42</Citation><ArticleIdList><ArticleId IdType="pubmed">15202709</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Biol. 2009;10(3):R25</Citation><ArticleIdList><ArticleId IdType="pubmed">19261174</ArticleId></ArticleIdList></Reference><Reference><Citation>EMBO J. 2012 Nov 14;31(22):4359-70</Citation><ArticleIdList><ArticleId IdType="pubmed">23064146</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 1999 Aug 20;285(5431):1256-8</Citation><ArticleIdList><ArticleId IdType="pubmed">10455050</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 2002;14 Suppl:S165-83</Citation><ArticleIdList><ArticleId IdType="pubmed">12045276</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Physiol. 2007 Apr;143(4):1918-28</Citation><ArticleIdList><ArticleId IdType="pubmed">17322337</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 1995 Jul;7(7):1099-1111</Citation><ArticleIdList><ArticleId IdType="pubmed">12242400</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant. 2013 Mar;6(2):275-86</Citation><ArticleIdList><ArticleId IdType="pubmed">23355543</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2010 May 1;26(9):1273-5</Citation><ArticleIdList><ArticleId IdType="pubmed">20223836</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Mol Biol. 2010 Jun;73(3):251-69</Citation><ArticleIdList><ArticleId IdType="pubmed">20157764</ArticleId></ArticleIdList></Reference><Reference><Citation>J Biol Chem. 2003 Jun 20;278(25):22453-9</Citation><ArticleIdList><ArticleId IdType="pubmed">12695519</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 2002 Feb;14(2):465-77</Citation><ArticleIdList><ArticleId IdType="pubmed">11884687</ArticleId></ArticleIdList></Reference><Reference><Citation>Curr Opin Plant Biol. 2003 Oct;6(5):410-7</Citation><ArticleIdList><ArticleId IdType="pubmed">12972040</ArticleId></ArticleIdList></Reference><Reference><Citation>Planta. 2003 Nov;218(1):1-14</Citation><ArticleIdList><ArticleId IdType="pubmed">14513379</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Physiol. 2005 Dec;139(4):1762-72</Citation><ArticleIdList><ArticleId IdType="pubmed">16299175</ArticleId></ArticleIdList></Reference><Reference><Citation>Annu Rev Plant Physiol Plant Mol Biol. 1996 Jun;47:377-403</Citation><ArticleIdList><ArticleId IdType="pubmed">15012294</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Genet. 2005 Oct;37(10):1029-30</Citation><ArticleIdList><ArticleId IdType="pubmed">16195719</ArticleId></ArticleIdList></Reference><Reference><Citation>Ann Bot. 2003 Apr;91(5):503-27</Citation><ArticleIdList><ArticleId IdType="pubmed">12646496</ArticleId></ArticleIdList></Reference><Reference><Citation>Biol Proced Online. 2015 Jan 06;17:1</Citation><ArticleIdList><ArticleId IdType="pubmed">25698907</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Biol. 2005;6(12):R101</Citation><ArticleIdList><ArticleId IdType="pubmed">16356264</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Commun. 2013;4:2797</Citation><ArticleIdList><ArticleId IdType="pubmed">24256998</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetica. 2015 Apr;143(2):225-39</Citation><ArticleIdList><ArticleId IdType="pubmed">25233990</ArticleId></ArticleIdList></Reference><Reference><Citation>Annu Rev Plant Physiol Plant Mol Biol. 2000 Jun;51:463-499</Citation><ArticleIdList><ArticleId IdType="pubmed">15012199</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Yu, Le" sort="Yu, Le" uniqKey="Yu L" first="Le" last="Yu">Le Yu</name></noRegion><name sortKey="Bai, Xiaotao" sort="Bai, Xiaotao" uniqKey="Bai X" first="Xiaotao" last="Bai">Xiaotao Bai</name><name sortKey="Chen, Ningning" sort="Chen, Ningning" uniqKey="Chen N" first="Ningning" last="Chen">Ningning Chen</name><name sortKey="Lei, Wenli" sort="Lei, Wenli" uniqKey="Lei W" first="Wenli" last="Lei">Wenli Lei</name><name sortKey="Ma, Jianchao" sort="Ma, Jianchao" uniqKey="Ma J" first="Jianchao" last="Ma">Jianchao Ma</name><name sortKey="Niu, Zhimin" sort="Niu, Zhimin" uniqKey="Niu Z" first="Zhimin" last="Niu">Zhimin Niu</name><name sortKey="Shao, Xuemin" sort="Shao, Xuemin" uniqKey="Shao X" first="Xuemin" last="Shao">Xuemin Shao</name><name sortKey="Wan, Dongshi" sort="Wan, Dongshi" uniqKey="Wan D" first="Dongshi" last="Wan">Dongshi Wan</name><name sortKey="Zhou, Fangfang" sort="Zhou, Fangfang" uniqKey="Zhou F" first="Fangfang" last="Zhou">Fangfang Zhou</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PoplarV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001147 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 001147 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= PoplarV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:29292723
|texte= Tissue-Specific Transcriptome Analysis Reveals Multiple Responses to Salt Stress in Populus euphratica Seedlings.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:29292723" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PoplarV1
| This area was generated with Dilib version V0.6.37. |  |